PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G126000.1
Common NameB456_008G126000, LOC105763912
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 185aa    MW: 20383.8 Da    PI: 5.6887
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G126000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.8e-193585155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Gorai.008G126000.1 35 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAFCLRG 85
                        68*****887.**********843...6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.8E-133585IPR001471AP2/ERF domain
PROSITE profilePS5103223.8413693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-313694IPR001471AP2/ERF domain
SMARTSM003804.7E-373699IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-223695IPR016177DNA-binding domain
CDDcd000181.88E-323794No hitNo description
PRINTSPR003673.2E-133748IPR001471AP2/ERF domain
PRINTSPR003673.2E-137595IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEQPPYTEDD LNASTASPES AMKHDTKGGG GTRHPVYRGV RKRRWGKWVS EIREPRKKSR  60
IWLGSFPVPE MAAKAYDVAA FCLRGRKAQL NFPDEVDDLP IPLTSTARDI QAAAAKAAHL  120
VVSSSKKIPE SSEDGSDDFW GEIELPELMN NGGCQWNSCG WTFAGDSSWL DGETQTQQHF  180
LACL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-163797667ATERF1
3gcc_A2e-163797667ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437772.11e-137PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI24e-61ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A0D2PTU31e-137A0A0D2PTU3_G
STRINGPOPTR_0014s09540.12e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-61ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]